I am sure if you go in and ask, they will think your up to something and not taking this seriously.
But if it is your first offence, and your a decent person they normaly waive most if not all the charges.
The fact you stole from your employer, will make it look like you have an issue earning a living, and respecting rules and authority.
I would recomend contacting the Law office of:
http://www.smillaw.com/Attorneys/
They got me off on ALL sorts of shit in FFX.
Most of it I did, but never had to pay a dime to the courts and it was removed from my record. (Idid pay them of course)
Even my attempted murder charge they got changed to domestic assult and then dropped. No classes, no fines, and totaly off my record.